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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921829.1_cds_XP_016470718.1_63134
CDS Infomation

[gene=LOC107792967] [db_xref=GeneID:107792967] [protein=pentatricopeptide repeat-containing protein At2g15690-like isoform X2] [protein_id=XP_016470718.1] [location=complement(join(19096..20615,20760..21348))] [gbkey=CDS]
Sequence

ATGGCTTCTCTAATGGCGATTCGCAAAGCTCGAATCTCCATTTCCACTTCCTCACACAAG
GTACGTTTATTATACTTCTCTTCGCGCTCTATTTCCGACGTTAAATTCCCTAAAACCCTA
ACCTTAAACTCCCCGCTCTTATCAGTACCTCTGAAAACCCTATCAACATTCGCAGCACCA
AACGATGCTCAACAAATTCCCCCACACCCCTCTGATTCACCTAGGGTTCCACAAAATCGT
GATTTTGGAAGTCCTGCTCAACAGTGGAATAATCAAACCCAGAATTATCCGAATAATAAT
CATACGAATATGTCGTATCCTCAGTATCAAACTCAAAATCCTAATCAGGCGAATCAAGGT
TATCCAAATTATGGAAATGTTAATCCCGGTCAAGGATTTGCTAATCCTGGTCAAGTATAT
AGCCAAGGTTTTCAGAATCAGAACTTTTCTCAGCGTCCAAACATTAGTGACAGGCACAAT
ATAAGCCCTAATGTTCAAAATCAGAACATTCAGTATAGGCCAAACCCCGGTGAGCCTCGA
AATAACCTTCCTCCTGGAAATGTTAACCAATGGAATAATCAAAATCAAGGCTTCAGACAA
CAAGGTAATCCTAGTGCAGCTCCAAGTTATCCACAAGGTGGATATCAGAATCCGGAACAC
GCACAACACCCTAATAGGAATCAGAATTATCCACAGCCTGATTCTGGTAATCAGTGGAGT
AATCAAAATCAAGGCTTCAGACAACAAGGTAATCCTAGTGCAGCTCCAAGTTATCCACAA
GGTGGATATCAGAATCCGGAACACGCACAACACCCTAATAGGAATCAGAATTATCCACAG
CCTGGTTCTGGTAATCAGTGGAGTAATCAAAATCACACGCCAAGATTAAGCCAAGGTCAA
CTTCCTCAGGCACAGAACGTCCAGCCAGGAAGTGGGTTTCCGATAAATAATCAACCTCAG
AACCAAGCTGAGGTTGTGCAGAATCAAGTGCCAAGTGTTGATTTAATCAGCTTGTGCCGA
GAGGGTAAAGTTAAGGAGGTTATTGAACATATGGAGCAGGGAGTAATTGGTGATGCGCAA
TGTTTTGAGATGCTCTTTGAGTTATGTGCGAACTCGAAGAAACTTGAAGATGCTAAAAAG
GTGCATGATTACTTTTTGAGATCAAAGTTCAGGAGTGATCTTCGTTTGAGCAATAAAGTT
ATTAATATGTATTCCAAGTGTGGAAGTATGATAGATGCCCGCAGGGTTTTTGATCATATG
CGTGATAGGGATATGGACTCATGGCATTTGATGATAAATGGATATGCACTGAATGGATTG
GGGGATGATGGGTTGACATTGTATGATCAGATGAGGGAGTTGGGAATGAAGCCAAGCGAG
GAAACTTTTCTTTACGTTTTCGAGGCTTGTGCCAGTGCGGATGCCATAGATGAGGCTTTC
ATGCATTTTGGGTCGATGAAGAGTGAGTATGGAATTTCTCCACAGGTGGAGCACTACTTG
GGACTTATGGGTGTTCTAGGAAAATGTGGACATCTTGCTGAAGCAGAGGATTATATCACT
AAGCTCCCATTTGAACCAACTGCAGCTGTCTGGGAAGCATTAATGAATTATGCTCGTATA
CACGGCGATATTGATCTTGAGGACCGAGCTGAGGAGTTGATGGTTGGGCTTGATCCTTCT
AAGGCTGTTGCTAATAAGATTCCTACTCCGCCACCGAAGAAGCAGCTAGCAATTAACATG
CTTGAGGGAAGAAATAGAGTAGCTGAGTCTCGTAACCCAACCCTATATAAGGATGATGAG
AAGTTGAGGGCTGCAATGAAAGAACAAGCTTATGTGCCTGATACCAGATATGTTCTTCAT
GATATTGATCAGGAAGCTAAGGAACAGGCCTTGCTATATCACAGTGAGCGTTTAGCCATT
GCATATGGTCTGATTAGCACCCCTGCTAGAACACCTTTGCGCATTATAAAGAATCTCCGT
GTATGTGGTGATTGTCACAATGCCATCAAGATTATGTCAAGGATTGTTGGGCGAGAGTTA
ATTGTCAGGGACAACAAACGGTTTCATCATTTCAAGGATGGCAAATGCTCTTGTGGTGAT
TATTGGTGA

Peptide Sequence

PEP ID

XP_016470718.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X2 [Nicotiana tabacum]
Sequence

MASLMAIRKARISISTSSHKVRLLYFSSRSISDVKFPKTLTLNSPLLSVPLKTLSTFAAP
NDAQQIPPHPSDSPRVPQNRDFGSPAQQWNNQTQNYPNNNHTNMSYPQYQTQNPNQANQG
YPNYGNVNPGQGFANPGQVYSQGFQNQNFSQRPNISDRHNISPNVQNQNIQYRPNPGEPR
NNLPPGNVNQWNNQNQGFRQQGNPSAAPSYPQGGYQNPEHAQHPNRNQNYPQPDSGNQWS
NQNQGFRQQGNPSAAPSYPQGGYQNPEHAQHPNRNQNYPQPGSGNQWSNQNHTPRLSQGQ
LPQAQNVQPGSGFPINNQPQNQAEVVQNQVPSVDLISLCREGKVKEVIEHMEQGVIGDAQ
CFEMLFELCANSKKLEDAKKVHDYFLRSKFRSDLRLSNKVINMYSKCGSMIDARRVFDHM
RDRDMDSWHLMINGYALNGLGDDGLTLYDQMRELGMKPSEETFLYVFEACASADAIDEAF
MHFGSMKSEYGISPQVEHYLGLMGVLGKCGHLAEAEDYITKLPFEPTAAVWEALMNYARI
HGDIDLEDRAEELMVGLDPSKAVANKIPTPPPKKQLAINMLEGRNRVAESRNPTLYKDDE
KLRAAMKEQAYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR
VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW

Transcript Sequence

Gene sequence data has not been registered.